* using log directory 'd:/Rcompile/CRANpkg/local/4.5/MMLR.Rcheck' * using R Under development (unstable) (2024-11-12 r87322 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.3.0 GNU Fortran (GCC) 13.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'MMLR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'MMLR' version '0.2.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'MMLR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s] OK * checking whether the package can be loaded with stated dependencies ... [0s] OK * checking whether the package can be unloaded cleanly ... [0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s] OK * checking whether the namespace can be unloaded cleanly ... [0s] OK * checking loading without being on the library search path ... [0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [2s] OK * checking Rd files ... [1s] NOTE checkRd: (-1) Aver_soj_time.Rd:25: Lost braces; missing escapes or markup? 25 | Matrix Q is so-called Generator matrix: \eqn{Q=\lambda-\Lambda, where \lambda} is matrix with known transition rates from state $s_{i}$ to state $s_{j}$, | ^ checkRd: (-1) Aver_soj_time.Rd:25: Lost braces; missing escapes or markup? 25 | Matrix Q is so-called Generator matrix: \eqn{Q=\lambda-\Lambda, where \lambda} is matrix with known transition rates from state $s_{i}$ to state $s_{j}$, | ^ checkRd: (-1) B_est.Rd:34: Lost braces; missing escapes or markup? 34 | where vector of average sojourn times in each state $t_{i}$ is calculated using function Aver_soj_time, $t_{i}$ is an element of tGiven, $x_{i}$ is a vector of matrix X. | ^ checkRd: (-1) B_est.Rd:34: Lost braces; missing escapes or markup? 34 | where vector of average sojourn times in each state $t_{i}$ is calculated using function Aver_soj_time, $t_{i}$ is an element of tGiven, $x_{i}$ is a vector of matrix X. | ^ checkRd: (-1) B_est.Rd:34: Lost braces; missing escapes or markup? 34 | where vector of average sojourn times in each state $t_{i}$ is calculated using function Aver_soj_time, $t_{i}$ is an element of tGiven, $x_{i}$ is a vector of matrix X. | ^ checkRd: (-1) VarY.Rd:31: Lost braces; missing escapes or markup? 31 | where vector of average sojourn times in each state $t_{i}$ is calculated using function Aver_soj_time | ^ checkRd: (-1) Ysimulation.Rd:30: Lost braces; missing escapes or markup? 30 | The i-th response $Y_{i}$ is defined by the following formula: $Y_{i}(t)=x_{i}\eqn{\beta} + Z_{i} sqrt{t}, i=1,...,n.$ | ^ checkRd: (-1) Ysimulation.Rd:30: Lost braces; missing escapes or markup? 30 | The i-th response $Y_{i}$ is defined by the following formula: $Y_{i}(t)=x_{i}\eqn{\beta} + Z_{i} sqrt{t}, i=1,...,n.$ | ^ checkRd: (-1) Ysimulation.Rd:30: Lost braces; missing escapes or markup? 30 | The i-th response $Y_{i}$ is defined by the following formula: $Y_{i}(t)=x_{i}\eqn{\beta} + Z_{i} sqrt{t}, i=1,...,n.$ | ^ checkRd: (-1) Ysimulation.Rd:30: Lost braces; missing escapes or markup? 30 | The i-th response $Y_{i}$ is defined by the following formula: $Y_{i}(t)=x_{i}\eqn{\beta} + Z_{i} sqrt{t}, i=1,...,n.$ | ^ checkRd: (-1) Ysimulation.Rd:30: Lost braces 30 | The i-th response $Y_{i}$ is defined by the following formula: $Y_{i}(t)=x_{i}\eqn{\beta} + Z_{i} sqrt{t}, i=1,...,n.$ | ^ checkRd: (-1) randomizeTau.Rd:29: Lost braces; missing escapes or markup? 29 | Initial values of observation times are multiplied by a random value ($tau_{i}$ x k x rnd(0, 1)). All times are independent and time of ith observation has uniform distribution on (0, k$tau_{i}$). | ^ checkRd: (-1) randomizeTau.Rd:29: Lost braces; missing escapes or markup? 29 | Initial values of observation times are multiplied by a random value ($tau_{i}$ x k x rnd(0, 1)). All times are independent and time of ith observation has uniform distribution on (0, k$tau_{i}$). | ^ checkRd: (-1) randomizeX.Rd:41: Lost braces; missing escapes or markup? 41 | Random perturbations are added to the initial values of matrix X elements ($X_{i,j}$ + rnd), which are distributed according to a chosen distribution (possible alternatives: uniform, exponential and gamma distribution). | ^ * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking LazyData ... INFO 'LazyData' is specified without a 'data' directory * checking examples ... [2s] OK * checking PDF version of manual ... [21s] OK * checking HTML version of manual ... [2s] OK * DONE Status: 1 NOTE