Package: tern
Title: Create Common TLGs Used in Clinical Trials
Version: 0.9.10
Date: 2025-12-14
Authors@R: c(
    person("Joe", "Zhu", , "joe.zhu@roche.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-7566-2787")),
    person("Daniel", "Sabanés Bové", , "daniel.sabanes_bove@rconis.com", role = "aut"),
    person("Jana", "Stoilova", , "jana.stoilova@roche.com", role = "aut"),
    person("Davide", "Garolini", , "davide.garolini@roche.com", role = "aut",
           comment = c(ORCID = "0000-0002-1445-1369")),
    person("Emily", "de la Rua", , "emily.de_la_rua@contractors.roche.com", role = "aut",
           comment = c(ORCID = "0009-0000-8738-5561")),
    person("Abinaya", "Yogasekaram", , "abinaya.yogasekaram@contractors.roche.com", role = "aut",
           comment = c(ORCID = "0009-0005-2083-1105")),
    person("Heng", "Wang", , "wang.heng@gene.com", role = "aut"),
    person("Francois", "Collin", role = "aut"),
    person("Adrian", "Waddell", , "adrian.waddell@gene.com", role = "aut"),
    person("Pawel", "Rucki", , "pawel.rucki@roche.com", role = "aut"),
    person("Chendi", "Liao", , "chendi.liao@roche.com", role = "aut"),
    person("Jennifer", "Li", , "li.jing@gene.com", role = "aut"),
    person("F. Hoffmann-La Roche AG", role = c("cph", "fnd"))
  )
Description: Table, Listings, and Graphs (TLG) library for common outputs
    used in clinical trials.
License: Apache License 2.0
URL: https://insightsengineering.github.io/tern/,
        https://github.com/insightsengineering/tern/
BugReports: https://github.com/insightsengineering/tern/issues
Depends: R (>= 4.4.0), rtables (>= 0.6.15)
Imports: broom (>= 1.0.8), car (>= 3.1-3), checkmate (>= 2.3.2),
        cowplot (>= 1.1.3), dplyr (>= 1.0.0), emmeans (>= 1.10.4),
        forcats (>= 1.0.0), formatters (>= 0.5.12), ggplot2 (>= 3.5.0),
        grid, gridExtra (>= 2.0.0), gtable (>= 0.3.0), labeling,
        lifecycle (>= 0.2.0), magrittr (>= 1.5), MASS (>= 7.3-60),
        methods, nestcolor (>= 0.1.1), Rdpack (>= 2.4), rlang (>=
        1.1.0), scales (>= 1.2.0), stats, survival (>= 3.8-3), tibble
        (>= 3.2.1), tidyr (>= 0.8.3), utils
Suggests: knitr (>= 1.42), lattice (>= 0.18-4), lubridate (>= 1.7.9),
        rmarkdown (>= 2.23), sass (>= 0.4.10), stringr (>= 1.4.1),
        svglite (>= 2.1.2), testthat (>= 3.1.9), withr (>= 2.0.0)
VignetteBuilder: knitr, rmarkdown
RdMacros: lifecycle, Rdpack
Config/Needs/verdepcheck: insightsengineering/rtables,
        tidymodels/broom, cran/car, mllg/checkmate, wilkelab/cowplot,
        tidyverse/dplyr, rvlenth/emmeans, tidyverse/forcats,
        insightsengineering/formatters, tidyverse/ggplot2,
        r-lib/gtable, r-lib/lifecycle, tidyverse/magrittr,
        GeoBosh/Rdpack, r-lib/rlang, r-lib/scales, therneau/survival,
        tidyverse/tibble, tidyverse/tidyr, yihui/knitr,
        deepayan/lattice, tidyverse/lubridate,
        insightsengineering/nestcolor, rstudio/rmarkdown,
        tidyverse/stringr, r-lib/svglite, r-lib/testthat, r-lib/withr
Config/Needs/website: insightsengineering/nesttemplate
Config/testthat/edition: 3
Encoding: UTF-8
Language: en-US
LazyData: true
RoxygenNote: 7.3.3
Collate: 'formatting_functions.R' 'abnormal.R' 'abnormal_by_baseline.R'
        'abnormal_by_marked.R' 'abnormal_by_worst_grade.R'
        'abnormal_lab_worsen_by_baseline.R'
        'analyze_colvars_functions.R' 'analyze_functions.R'
        'analyze_variables.R' 'analyze_vars_in_cols.R'
        'argument_convention.R' 'bland_altman.R'
        'combination_function.R' 'compare_variables.R'
        'control_incidence_rate.R' 'control_logistic.R'
        'control_step.R' 'control_survival.R' 'count_cumulative.R'
        'count_missed_doses.R' 'count_occurrences.R'
        'count_occurrences_by_grade.R'
        'count_patients_events_in_cols.R' 'count_patients_with_event.R'
        'count_patients_with_flags.R' 'count_values.R'
        'cox_regression.R' 'cox_regression_inter.R' 'coxph.R'
        'd_pkparam.R' 'data.R' 'decorate_grob.R'
        'desctools_binom_diff.R' 'df_explicit_na.R'
        'estimate_multinomial_rsp.R' 'estimate_proportion.R'
        'fit_rsp_step.R' 'fit_survival_step.R' 'g_forest.R' 'g_ipp.R'
        'g_km.R' 'g_lineplot.R' 'g_step.R' 'g_waterfall.R'
        'h_adsl_adlb_merge_using_worst_flag.R'
        'h_biomarkers_subgroups.R' 'h_cox_regression.R'
        'h_incidence_rate.R' 'h_km.R' 'h_logistic_regression.R'
        'h_map_for_count_abnormal.R' 'h_pkparam_sort.R'
        'h_response_biomarkers_subgroups.R' 'h_response_subgroups.R'
        'h_stack_by_baskets.R' 'h_step.R'
        'h_survival_biomarkers_subgroups.R'
        'h_survival_duration_subgroups.R' 'imputation_rule.R'
        'incidence_rate.R' 'logistic_regression.R' 'missing_data.R'
        'odds_ratio.R' 'package.R' 'prop_diff.R' 'prop_diff_test.R'
        'prune_occurrences.R' 'response_biomarkers_subgroups.R'
        'response_subgroups.R' 'riskdiff.R' 'rtables_access.R'
        'score_occurrences.R' 'split_cols_by_groups.R' 'stat.R'
        'summarize_ancova.R' 'summarize_change.R' 'summarize_colvars.R'
        'summarize_coxreg.R' 'summarize_functions.R'
        'summarize_glm_count.R' 'summarize_num_patients.R'
        'summarize_patients_exposure_in_cols.R'
        'survival_biomarkers_subgroups.R' 'survival_coxph_pairwise.R'
        'survival_duration_subgroups.R' 'survival_time.R'
        'survival_timepoint.R' 'utils.R' 'utils_checkmate.R'
        'utils_default_stats_formats_labels.R' 'utils_factor.R'
        'utils_ggplot.R' 'utils_grid.R' 'utils_rtables.R'
        'utils_split_funs.R'
NeedsCompilation: no
Packaged: 2025-12-17 03:55:15 UTC; rstudio
Author: Joe Zhu [aut, cre] (ORCID: <https://orcid.org/0000-0001-7566-2787>),
  Daniel Sabanés Bové [aut],
  Jana Stoilova [aut],
  Davide Garolini [aut] (ORCID: <https://orcid.org/0000-0002-1445-1369>),
  Emily de la Rua [aut] (ORCID: <https://orcid.org/0009-0000-8738-5561>),
  Abinaya Yogasekaram [aut] (ORCID:
    <https://orcid.org/0009-0005-2083-1105>),
  Heng Wang [aut],
  Francois Collin [aut],
  Adrian Waddell [aut],
  Pawel Rucki [aut],
  Chendi Liao [aut],
  Jennifer Li [aut],
  F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Joe Zhu <joe.zhu@roche.com>
Repository: CRAN
Date/Publication: 2025-12-18 06:10:24 UTC
Built: R 4.5.2; ; 2026-01-13 18:15:20 UTC; windows
