Tandem Repeat Analysis by Capillary Electrophoresis
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Documentation for package ‘trace’ version 1.0.0
Help Pages
| calculate_instability_metrics | Calculate Repeat Instability Metrics |
| cell_line_fsa_list | A list of fsa files |
| example_data | example_data |
| example_data_repeat_table | example_data_repeat_table |
| extract_alleles | Extract Modal Peaks |
| extract_fragments | Extract All Fragments |
| extract_ladder_summary | Extract ladder summary |
| extract_repeat_correction_summary | Extract repeat correction summary |
| extract_trace_table | Extract traces |
| fix_ladders_interactive | Fix ladders interactively |
| fragments | fragments object |
| genemapper_table_to_fragments | Convert Genemapper Peak Table to fragments class |
| load_config | Load Trace Config File |
| metadata | metadata |
| plot_batch_correction_samples | Plot correction samples |
| plot_data_channels | plot_data_channels |
| plot_fragments | Plot Peak Data |
| plot_ladders | Plot ladder |
| plot_repeat_correction_model | Plot Repeat Correction Model |
| plot_traces | Plot sample traces |
| read_fsa | Read fsa file |
| remove_fragments | Remove Samples from List |
| repeat_table_to_fragments | Convert Repeat Table to Repeats Fragments |
| size_table_to_fragments | Convert Size Table to Fragments |
| trace | Main function for sample processing |