Last updated on 2026-01-17 03:51:57 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.3 | 5.51 | 149.74 | 155.25 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.3 | 3.74 | 110.89 | 114.63 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.3 | 9.00 | 243.79 | 252.79 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.1.3 | 8.00 | 267.50 | 275.50 | OK | |
| r-devel-windows-x86_64 | 1.1.3 | 9.00 | 205.00 | 214.00 | OK | |
| r-patched-linux-x86_64 | 1.1.3 | 6.07 | 141.84 | 147.91 | OK | |
| r-release-linux-x86_64 | 1.1.3 | 5.02 | 142.48 | 147.50 | OK | |
| r-release-macos-arm64 | 1.1.3 | 1.00 | 43.00 | 44.00 | ERROR | |
| r-release-macos-x86_64 | 1.1.3 | 4.00 | 179.00 | 183.00 | OK | |
| r-release-windows-x86_64 | 1.1.3 | 9.00 | 201.00 | 210.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.3 | 1.00 | 51.00 | 52.00 | OK | |
| r-oldrel-macos-x86_64 | 1.1.3 | 4.00 | 205.00 | 209.00 | OK | |
| r-oldrel-windows-x86_64 | 1.1.3 | 10.00 | 258.00 | 268.00 | OK |
Version: 1.1.3
Check: examples
Result: ERROR
Running examples in ‘logitr-Ex.R’ failed
The error most likely occurred in:
> ### Name: logitr
> ### Title: The main function for estimating logit models
> ### Aliases: logitr
> ### Keywords: logit logitr mixed mnl mxl willingness-to-pay wtp
>
> ### ** Examples
>
> # For more detailed examples, visit
> # https://jhelvy.github.io/logitr/articles/
>
> library(logitr)
>
> # Estimate a MNL model in the Preference space
> mnl_pref <- logitr(
+ data = yogurt,
+ outcome = "choice",
+ obsID = "obsID",
+ pars = c("price", "feat", "brand")
+ )
Running model...
Done!
>
> # Estimate a MNL model in the WTP space, using a 5-run multistart
> mnl_wtp <- logitr(
+ data = yogurt,
+ outcome = "choice",
+ obsID = "obsID",
+ pars = c("feat", "brand"),
+ scalePar = "price",
+ numMultiStarts = 5
+ )
Running multistart...
Random starting point iterations: 5
Number of cores: 15
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 5)
An irrecoverable exception occurred. R is aborting now ...
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 5)
An irrecoverable exception occurred. R is aborting now ...
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3:
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, doTryCatch(return(expr), name, parentenv, handler)
5: mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers) 2:
tryCatchOne(expr, names, parentenv, handlers[[1L]]) 7: eval_f(x0, ...)
6: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)tryCatchList(expr, classes, parentenv, handlers)})
7: tryCatch({
result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, 4: mi = mi, opts = mi$options)}, error = function(e) {doTryCatch(return(expr), name, parentenv, handler)})
8: system.time({ model <- mi$model result <- NULL 8: tryCatch({ 5: result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, tryCatchOne(expr, names, parentenv, handlers[[1L]]) mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) {
6: tryCatchList(expr, classes, parentenv, handlers)system.time({
model <- mi$model result <- NULL tryCatch({ 7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
mi = mi, opts = mi$options) result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, 14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
mi = mi, opts = mi$options) call <- sys.call(-4L) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") model$status <- result$status 9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ")doTryCatch(return(expr), name, parentenv, handler) } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) }
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers) model$message <- result$message
invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)14:
16: }tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], 21: type = "b") if (w > LONG) suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
prefix <- paste0(prefix, "\n ")
}11: 22: withCallingHandlers(expr, message = function(c) if (inherits(c, else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings())doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]]) } classes)) tryInvokeRestart("muffleMessage"))
13: tryCatchList(expr, classes, parentenv, handlers)
23: 14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) {suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 5)
An irrecoverable exception occurred. R is aborting now ...
if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 5)
An irrecoverable exception occurred. R is aborting now ...
sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 5)
An irrecoverable exception occurred. R is aborting now ...
Error in names(x) <- value :
'names' attribute [3] must be the same length as the vector [0]
Calls: logitr -> getMultistartSummary -> colnames<-
Execution halted
Flavor: r-release-macos-arm64
Version: 1.1.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘basic_usage.Rmd’ using rmarkdown
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
14: tryCatch(expr, error = function(e) {
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: 17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: parallel::mclapply(miList, runModel, mc.cores = numCores)withCallingHandlers(expr, message = function(c) if (inherits(c,
*** caught segfault ***
address 0x110, cause 'invalid permissions'
classes)) tryInvokeRestart("muffleMessage"))
20: 23: withCallingHandlers(expr, warning = function(w) if (inherits(w, suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10) if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd)
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout())32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35:
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir)withRestartList(expr, restarts[-nr])
36: output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
60: tools:::.buildOneVignette("basic_usage.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "basic_usage", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c25d805bf.rds")
An irrecoverable exception occurred. R is aborting now ...
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: 44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) })
8: system.time({ pb$interrupt() model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) }})
9: FUN(X[[i]], ...)
paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
10: lapply(X = S, FUN = FUN, ...)
11: 52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]]) output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55:
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) {engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler) if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ")
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) 58: tryCatchList(expr, classes, parentenv, handlers)
59: prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n")tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) } } invisible(structure(msg, class = "try-error", condition = e))})
}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: })
60: tools:::.buildOneVignette("basic_usage.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "basic_usage", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c25d805bf.rds")FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
An irrecoverable exception occurred. R is aborting now ...
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("basic_usage.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "basic_usage", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c25d805bf.rds")
An irrecoverable exception occurred. R is aborting now ...
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
Traceback:
1: 53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {
*** caught segfault ***
address 0x110, cause 'invalid permissions'
})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { })tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", 9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]]) file, conditionMessage(e)))})
60: tools:::.buildOneVignette("basic_usage.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "basic_usage", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c25d805bf.rds")
*** caught segfault ***
address 0x110, cause 'invalid permissions'
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) {An irrecoverable exception occurred. R is aborting now ...
if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20:
*** caught segfault ***
address 0x110, cause 'invalid permissions'
withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("basic_usage.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "basic_usage", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c25d805bf.rds")
An irrecoverable exception occurred. R is aborting now ...
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
*** caught segfault ***
address 0x110, cause 'invalid permissions'
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18:
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])lapply(seq_len(cores), inner.do)
Traceback:
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2:
eval_f(x0, ...) 6:
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({12: tryCatchOne(expr, names, parentenv, handlers[[1L]])20:
result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULLwithCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: tryCatch({13: tryCatchList(expr, classes, parentenv, handlers)
suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, 14: withCallingHandlers(expr, message = function(c) if (inherits(c, tryCatch(expr, error = function(e) { classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))) call <- conditionCall(e)
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
Traceback:
27: if (!is.null(call)) { 1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)eval(expr, envir) if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) mi = mi, opts = mi$options) }, error = function(e) {
28: })
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) prefix <- paste("Error in", dcall, ": ")
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) {withVisible(eval(expr, envir)) if (!is.null(result)) {
29: withCallingHandlers(code, error = function (e)
Traceback:
model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message 1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, } mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, })
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})rlang::entrace(e), message = function (cnd) tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: })sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: doTryCatch(return(expr), name, parentenv, handler) sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w")
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L)
withCallingHandlers(code, error = function (e) 9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) {
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call){ msg <- paste0(prefix, conditionMessage(e), "\n") watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL) .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings())})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
}
34: 32: if (is.na(w)) dcall <- deparse(call, nlines = 1L)with_handlers({ prefix <- paste("Error in", dcall, ": ")withOneRestart(expr, restarts[[1L]]) invisible(structure(msg, class = "try-error", condition = e)) LONG <- 75L
sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], 35: w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") for (expr in tle$exprs) {withRestartList(expr, restarts[-nr]) ev <- withVisible(eval(expr, envir)) if (is.na(w))
watcher$capture_plot_and_output() w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") watcher$print_value(ev$value, ev$visible, envir) } TRUE36: doWithOneRestart(return(expr), restart)
37: }) type = "b")
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
if (w > LONG) }, handlers) if (w > LONG)
16: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]]) prefix <- paste0(prefix, "\n ") prefix <- paste0(prefix, "\n ") }33: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE)) else prefix <- "Error : " }doWithOneRestart(return(expr), restart) msg <- paste0(prefix, conditionMessage(e), "\n") else prefix <- "Error : "
msg <- paste0(prefix, conditionMessage(e), "\n")34: .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) {withOneRestart(expr, restarts[[1L]]) .Internal(seterrmessage(msg[1L]))
38: withRestartList(expr, restarts)
if (!silent && isTRUE(getOption("show.error.messages"))) {35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])17:
cat(msg, file = outFile) .Internal(printDeferredWarnings()) }FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do) invisible(structure(msg, class = "try-error", condition = e))})38:
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output()
watcher$print_value(ev$value, ev$visible, envir)19:
16: }parallel::mclapply(miList, runModel, mc.cores = numCores)
sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))20:
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
withCallingHandlers(expr, warning = function(w) if (inherits(w,
cat(msg, file = outFile) classes)) tryInvokeRestart("muffleWarning")) .Internal(printDeferredWarnings())20: 39: }withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning")) invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
21:
suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)) TRUE
16: withRestarts(with_handlers({22: }, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage")) for (expr in tle$exprs) {sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
ev <- withVisible(eval(expr, envir))
watcher$capture_plot_and_output()21: 23: 40: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))17: suppressMessages(suppressWarnings(parallel::mclapply(miList,
runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: FUN(X[[i]], ...)24: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat",
watcher$print_value(ev$value, ev$visible, envir)evaluate::evaluate(...)runMultistart(modelInputs) }
18: "brand"), scalePar = "price", numMultiStarts = 10) TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: lapply(seq_len(cores), inner.do)
evaluate::evaluate(...)
25: 19: parallel::mclapply(miList, runModel, mc.cores = numCores)logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
41:
evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, 41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, 26: 20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
42: eval(expr, envir)in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE,
keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L keep_message = if (is.numeric(options$message)) TRUE else options$message, else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
27: eval(expr, envir)
28:
22: 47: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))withVisible(eval(expr, envir))process_group(group)26:
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage")eval(expr, envir)
}}, warning = function (cnd) 48:
27: stop_on_error = if (is.numeric(options$error)) options$error else {23: suppressMessages(suppressWarnings(parallel::mclapply(miList, { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
eval(expr, envir) if (getOption("warn") >= 2 || getOption("warn") < 0) {withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),
return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd)28: 42: error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt()in_dir(input_dir(), expr) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) runModel, mc.cores = numCores)))withVisible(eval(expr, envir))
if (is_R_CMD_build() || is_R_CMD_check()) 29:
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else {{withCallingHandlers(code, error = function (e)
rlang::entrace(e), message = function (cnd) { error <<- format(e)24: watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) watcher$capture_plot_and_output() }) if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))) cnd <- sanitize_call(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
runMultistart(modelInputs)
30: watcher$push(cnd)
44:
switch(on_error, continue = invokeRestart("eval_continue"), eng_r(options)49:
stop = invokeRestart("eval_stop"), error = NULL)with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), })
eval(call)45: block_exec(params)
error = function(e) {46: 30: if (progress && is.function(pb$interrupt)) 25: call_block(x)eval(call)logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat",
31: pb$interrupt()47: "brand"), scalePar = "price", numMultiStarts = 10)
31:
if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e)26: eval(call)eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) }process_group(group)
eval(expr, envir)
32: }), list(rlang_trace_top_env = knit_global()))with_handlers({
27: TRUEeval(expr, envir)
28: withVisible(eval(expr, envir))
for (expr in tle$exprs) {
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() ev <- withVisible(eval(expr, envir))50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) if (on_message$capture) {}, handlers)
watcher$capture_plot_and_output()33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]]) pb$interrupt()
35: withRestartList(expr, restarts[-nr]) if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
48: watcher$print_value(ev$value, ev$visible, envir)withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), watcher$push(cnd) } TRUE }51: if (on_message$silence) { invokeRestart("muffleMessage") }process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: error = function(e) {}, warning = function (cnd) rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
}, handlers)54: 36:
{ if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })vweave_rmarkdown(...)doWithOneRestart(return(expr), restart)33: if (getOption("warn") >= 2 || getOption("warn") < 0) {
return() } watcher$capture_plot_and_output()
55: engine$weave(file, quiet = quiet, encoding = enc)
56: 49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) {doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)doWithOneRestart(return(expr), restart)37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
34: withOneRestart(expr, restarts[[1L]])
if (on_warning$capture) {38: cnd <- sanitize_call(cnd)
withRestartList(expr, restarts)
39: withRestarts(with_handlers({ if (progress && is.function(pb$interrupt)) watcher$push(cnd)35: pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())) for (expr in tle$exprs) {
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) ev <- withVisible(eval(expr, envir))withRestartList(expr, restarts[-nr])
watcher$capture_plot_and_output()
watcher$print_value(ev$value, ev$visible, envir) } TRUE36: }doWithOneRestart(return(expr), restart)
setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)37: if (on_warning$silence) {50: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]]) invokeRestart("muffleWarning")}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
}
38: withRestartList(expr, restarts)
xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),
60: }, error = function (cnd) 39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
{ watcher$capture_plot_and_output()tools:::.buildOneVignette("basic_usage.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", 40: cnd <- sanitize_call(cnd) error = function(e) {40: TRUE, FALSE, "basic_usage", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c25d805bf.rds")
An irrecoverable exception occurred. R is aborting now ...
evaluate::evaluate(...) if (progress && is.function(pb$interrupt))
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call) keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L paste0("\n", rule(), error, "\n", rule())) }, output_handler = knit_handlers(options$render, options))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
evaluate::evaluate(...)
42: 31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE
}, handlers)41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L
in_dir(input_dir(), expr)
33: 51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)doWithOneRestart(return(expr), restart)
34: 43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L
}, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)withOneRestart(expr, restarts[[1L]])56: doTryCatch(return(expr), name, parentenv, handler)
57:
tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({47: engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir)process_group(group) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet)35: else 2LwithRestartList(expr, restarts[-nr]) }, output_handler = knit_handlers(options$render, options)) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) {
OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", 42: file, conditionMessage(e)))})
60: tools:::.buildOneVignette("basic_usage.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "basic_usage", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c25d805bf.rds")
in_dir(input_dir(), expr)
An irrecoverable exception occurred. R is aborting now ...
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, 36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)48: stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) 39: eng_r(options)
withRestarts(with_handlers({45: for (expr in tle$exprs) {block_exec(params) ev <- withVisible(eval(expr, envir))
pb$interrupt() watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: 46: call_block(x)
47: process_group(group)
48: if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: 0L50: else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), block_exec(params)
error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output) error = function(e) {
if (progress && is.function(pb$interrupt)) 52: pb$interrupt()knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: 46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (is_R_CMD_build() || is_R_CMD_check()) if (progress && is.function(pb$interrupt)) error <<- format(e) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
}), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
engine$weave(file, quiet = quiet, encoding = enc)51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)50:
xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt()54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))
56: if (is_R_CMD_build() || is_R_CMD_check()) doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { error <<- format(e) OK <<- FALSE }), list(rlang_trace_top_env = knit_global())), function(loc) {})
60: tools:::.buildOneVignette("basic_usage.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "basic_usage", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c25d805bf.rds")
setwd(wd)An irrecoverable exception occurred. R is aborting now ...
write_utf8(res, output %n% stdout()) message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", paste0("\nQuitting from ", loc, if (!is.null(error)) file, conditionMessage(e)))})
60: tools:::.buildOneVignette("basic_usage.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "basic_usage", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c25d805bf.rds") paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51:
An irrecoverable exception occurred. R is aborting now ...
process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("basic_usage.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "basic_usage", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c25d805bf.rds")
An irrecoverable exception occurred. R is aborting now ...
Quitting from basic_usage.Rmd:82-91 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `names(x) <- value`:
! 'names' attribute [3] must be the same length as the vector [0]
---
Backtrace:
▆
1. └─logitr::logitr(...)
2. └─logitr:::getMultistartSummary(allModels)
3. └─base::`colnames<-`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'basic_usage.Rmd' failed with diagnostics:
'names' attribute [3] must be the same length as the vector [0]
--- failed re-building ‘basic_usage.Rmd’
--- re-building ‘benchmark.Rmd’ using rmarkdown
--- finished re-building ‘benchmark.Rmd’
--- re-building ‘convergence.Rmd’ using rmarkdown
--- finished re-building ‘convergence.Rmd’
--- re-building ‘data_formatting.Rmd’ using rmarkdown
--- finished re-building ‘data_formatting.Rmd’
--- re-building ‘interactions.Rmd’ using rmarkdown
--- finished re-building ‘interactions.Rmd’
--- re-building ‘mnl_models.Rmd’ using rmarkdown
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: 1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: 3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
model$status <- result$status model$message <- result$message }})
10:
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: lapply(X = S, FUN = FUN, ...)tryCatchOne(expr, names, parentenv, handlers[[1L]])
11: 6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, doTryCatch(return(expr), name, parentenv, handler) mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model 9: result <- NULLFUN(X[[i]], ...)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations13: model$status <- result$statustryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) {
call <- conditionCall(e)
Traceback:
model$message <- result$message10: 1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
Traceback:
if (!is.null(call)) {
}lapply(X = S, FUN = FUN, ...) 2: }) 1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)eval_f(x0, ...)
2: eval_f(x0, ...)
3:
9: 11: FUN(X[[i]], ...)nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
3: doTryCatch(return(expr), name, parentenv, handler) 5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: if (identical(call[[1L]], quote(doTryCatch))) tryCatchList(expr, classes, parentenv, handlers)
call <- sys.call(-4L) 7: dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ")12: tryCatch({ LONG <- 75Lnloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})10: lapply(X = S, FUN = FUN, ...) sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w")doTryCatch(return(expr), name, parentenv, handler)
5:
tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)tryCatchOne(expr, names, parentenv, handlers[[1L]])
11: 8: system.time({ model <- mi$model result <- NULL
if (is.na(w))
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) 6: tryCatchList(expr, classes, parentenv, handlers) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L],
type = "b")doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: if (w > LONG) tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) prefix <- paste0(prefix, "\n ") 7: dcall <- deparse(call, nlines = 1L) call <- sys.call(-4L)tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) mi = mi, opts = mi$options) prefix <- paste("Error in", dcall, ": ") .Internal(printDeferredWarnings()) dcall <- deparse(call, nlines = 1L)}, error = function(e) { }
*** caught segfault ***
})
8: system.time({ model <- mi$model result <- NULL
*** caught segfault ***
*** caught segfault ***
LONG <- 75L
*** caught segfault ***
tryCatch({address 0x110, cause 'invalid permissions'
address 0x110, cause 'invalid permissions'
result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, invisible(structure(msg, class = "try-error", condition = e))address 0x110, cause 'invalid permissions'
address 0x110, cause 'invalid permissions'
sm <- strsplit(conditionMessage(e), "\n")[[1L]] mi = mi, opts = mi$options) tryCatch({})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) {16: }, error = function(e) { w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") }) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b")sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE)) }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
if (w > LONG) 10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler) if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b")
12: if (!is.null(result)) {
if (w > LONG) prefix <- paste0(prefix, "\n ")tryCatchOne(expr, names, parentenv, handlers[[1L]])17: prefix <- paste0(prefix, "\n ")FUN(X[[i]], ...) model$fail <- FALSE model$coefficients <- result$solution } model$logLik <- as.numeric(-1 * result$objective)
}
18: 13: lapply(seq_len(cores), inner.do)tryCatchList(expr, classes, parentenv, handlers)
14: else prefix <- "Error : " model$iterations <- result$iterations model$status <- result$status model$message <- result$message
msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L]))19: } if (!silent && isTRUE(getOption("show.error.messages"))) { else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
})tryCatch(expr, error = function(e) {
call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ")15: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: 9: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
suppressMessages(suppressWarnings(parallel::mclapply(miList,
*** caught segfault ***
address 0x110, cause 'invalid permissions'
cat(msg, file = outFile) LONG <- 75L .Internal(printDeferredWarnings()) } sm <- strsplit(conditionMessage(e), "\n")[[1L]]FUN(X[[i]], ...) runModel, mc.cores = numCores)))
invisible(structure(msg, class = "try-error", condition = e))
24: })19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w")
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))runMultistart(modelInputs) if (is.na(w)) classes)) tryInvokeRestart("muffleWarning"))
w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], 10: 17:
type = "b")21:
Traceback:
Traceback:
FUN(X[[i]], ...) 1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective,
Traceback:
lapply(X = S, FUN = FUN, ...)suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)) 1: mi = mi, opts = mi$options)
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
1: 22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10, startVals = wtp_mnl_pref$Estimate)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { 3:
Traceback:
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
if (w > LONG) watcher$push(cnd) }mi$logitFuncs$getMnlV(pars, d$X, d$scalePar) if (on_message$silence) { invokeRestart("muffleMessage")
25: 11: }, error = function(e) {})doTryCatch(return(expr), name, parentenv, handler)
8: 2: 1: prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings())21:
eval_f(x0, ...)system.time({
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }12: }}) }logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10, startVals = wtp_mnl_pref$Estimate) invisible(structure(msg, class = "try-error", condition = e))}, warning = function (cnd)
26: eval(expr, envir)
mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: 27: eval(expr, envir)
28: withVisible(eval(expr, envir))tryCatchOne(expr, names, parentenv, handlers[[1L]])nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, }) mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
2:
result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, {
model <- mi$model29:
tryCatchList(expr, classes, parentenv, handlers) if (getOption("warn") >= 2 || getOption("warn") < 0) {13:
eval_f(x0, ...)15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: 22: mi = mi, opts = mi$options) result <- NULLtryCatchList(expr, classes, parentenv, handlers)lapply(seq_len(cores), inner.do)
return()}, error = function(e) { tryCatch({withCallingHandlers(expr, message = function(c) if (inherits(c,
3:
result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, classes)) tryInvokeRestart("muffleMessage")) }nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { 7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, })19: parallel::mclapply(miList, runModel, mc.cores = numCores)})withCallingHandlers(code, error = function (e) 9: FUN(X[[i]], ...)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))rlang::entrace(e), message = function (cnd) watcher$capture_plot_and_output(){ watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd)
mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: mi = mi, opts = mi$options) } if (!is.null(result)) { 8: 20: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
if (on_warning$silence) {23: })
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
17: FUN(X[[i]], ...)
system.time({ model <- mi$model24: if (on_warning$silence) { invokeRestart("muffleWarning") invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: 4: model$fail <- FALSEsuppressMessages(suppressWarnings(parallel::mclapply(miList, }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output()runMultistart(modelInputs) model$coefficients <- result$solution
runModel, mc.cores = numCores))) result <- NULL10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L)doTryCatch(return(expr), name, parentenv, handler) prefix <- paste("Error in", dcall, ": ")18:
watcher$print_value(ev$value, ev$visible, envir)
tryCatch({ LONG <- 75L } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
24: model$logLik <- as.numeric(-1 * result$objective) sm <- strsplit(conditionMessage(e), "\n")[[1L]]eval(call) w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w")runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10, startVals = wtp_mnl_pref$Estimate)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { if (is.na(w))
lapply(seq_len(cores), inner.do)25: model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L],
31: result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective,
mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
type = "b") watcher$capture_plot_and_output() 5: 18:
logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ")eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr]) LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]]21: w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L]))suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)) "brand"), scalePar = "price", numMultiStarts = 10, startVals = wtp_mnl_pref$Estimate)
if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) if (w > LONG)
22: withCallingHandlers(expr, message = function(c) if (inherits(c, 11: doTryCatch(return(expr), name, parentenv, handler) 9: if (on_message$capture) { watcher$push(cnd) .Internal(printDeferredWarnings()) } prefix <- paste0(prefix, "\n ")FUN(X[[i]], ...)
invisible(structure(msg, class = "try-error", condition = e))
46: } classes)) tryInvokeRestart("muffleMessage")) }lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
call_block(x)12: if (on_message$silence) {36: invokeRestart("muffleMessage")doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L
26:
}) else 2L }tryCatchOne(expr, names, parentenv, handlers[[1L]]) else prefix <- "Error : "25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", 47:
}, warning = function (cnd)
msg <- paste0(prefix, conditionMessage(e), "\n") "brand"), scalePar = "price", numMultiStarts = 10, startVals = wtp_mnl_pref$Estimate)10: lapply(X = S, FUN = FUN, ...)
}, output_handler = knit_handlers(options$render, options))eval(expr, envir)23: {13:
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)26: eval(expr, envir)
process_group(group) .Internal(seterrmessage(msg[1L]))
if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: 11: doTryCatch(return(expr), name, parentenv, handler) if (getOption("warn") >= 2 || getOption("warn") < 0) {suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10, startVals = wtp_mnl_pref$Estimate)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: 27: 31: eval(call)
15: 42: tryCatchList(expr, classes, parentenv, handlers)runMultistart(modelInputs)
withCallingHandlers(code, error = function (e) eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return()
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) }
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", in_dir(input_dir(), expr)48:
rlang::entrace(e), message = function (cnd) return()try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
14: if (!silent && isTRUE(getOption("show.error.messages"))) { } watcher$capture_plot_and_output()43: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), tryCatch(expr, error = function(e) { error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { watcher$capture_plot_and_output() "brand"), scalePar = "price", numMultiStarts = 10, startVals = wtp_mnl_pref$Estimate)in_input_dir(evaluate(code, envir = env, new_device = FALSE, 19: call <- conditionCall(e) if (progress && is.function(pb$interrupt)) if (on_warning$capture) { cnd <- sanitize_call(cnd)parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)){ cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e)) if (on_warning$capture) { cnd <- sanitize_call(cnd)32: pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) watcher$push(cnd) watcher$push(cnd)
error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule())) keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, }with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir))
26: watcher$capture_plot_and_output()})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do) }}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc) watcher$print_value(ev$value, ev$visible, envir)
}22: withCallingHandlers(expr, message = function(c) if (inherits(c, TRUE}, handlers)19: keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) if (on_warning$silence) { if (!is.null(call)) { watcher$capture_plot_and_output() if (on_message$capture) { if (identical(call[[1L]], quote(doTryCatch))) watcher$push(cnd) } if (on_message$silence) {51: invokeRestart("muffleWarning") classes)) tryInvokeRestart("muffleMessage")) call <- sys.call(-4L)eval(expr, envir)process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
0L } invokeRestart("muffleMessage")
else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(),
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: 27: 33: dcall <- deparse(call, nlines = 1L) if (on_warning$silence) { prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], parallel::mclapply(miList, runModel, mc.cores = numCores)}, error = function (cnd) 54: { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: invokeRestart("muffleWarning")eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage")vweave_rmarkdown(...)20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
eval(call)doWithOneRestart(return(expr), restart) }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34:
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
withOneRestart(expr, restarts[[1L]]) } type = "b") } output_dir = getwd(), ...)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() }
25:
if (w > LONG) prefix <- paste0(prefix, "\n ")
logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", watcher$capture_plot_and_output() "brand"), scalePar = "price", numMultiStarts = 10, startVals = wtp_mnl_pref$Estimate)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", 41: 58: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)54: }, warning = function (cnd) "brand"), scalePar = "price", numMultiStarts = 10, startVals = wtp_mnl_pref$Estimate) } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)tryCatchList(expr, classes, parentenv, handlers)32:
29:
47: vweave_rmarkdown(...)
if (on_warning$capture) {22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))withCallingHandlers(code, error = function (e) with_handlers({
for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart) cnd <- sanitize_call(cnd)35: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49:
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), 26: watcher$push(cnd)
rlang::entrace(e), message = function (cnd) error = function(e) {55: withRestartList(expr, restarts[-nr])eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) if (progress && is.function(pb$interrupt)) 37: engine$weave(file, quiet = quiet, encoding = enc)
}36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: {runMultistart(modelInputs){ watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers) }evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) if (on_warning$silence) {withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { if (getOption("warn") >= 2 || getOption("warn") < 0) {
33: 56: if (on_warning$silence) { 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: invokeRestart("muffleWarning")
pb$interrupt()doWithOneRestart(return(expr), restart) return() }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd)in_dir(input_dir(), expr) if (is_R_CMD_build() || is_R_CMD_check()) }doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers) watcher$capture_plot_and_output()
watcher$push(cnd)
error <<- format(e) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31:
ev <- withVisible(eval(expr, envir)) }), list(rlang_trace_top_env = knit_global()))43:
50: in_input_dir(evaluate(code, envir = env, new_device = FALSE, if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd)eval(call) invokeRestart("muffleWarning")
}}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), 59:
tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) } keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, 34: 59: error = function(e) {25: 32: }tryCatch({ if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)}) watcher$capture_plot_and_output()withOneRestart(expr, restarts[[1L]])logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", with_handlers({31: if (progress && is.function(pb$interrupt)) }, error = function(e) {
engine$weave(file, quiet = quiet, encoding = enc) keep_message = if (is.numeric(options$message)) TRUE else options$message, eval(call)
for (expr in tle$exprs) { stop_on_error = if (is.numeric(options$error)) options$error else { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("mnl_models.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c2a3d208e.rds")
An irrecoverable exception occurred. R is aborting now ...
if (options$error && options$include) setwd(startdir) "brand"), scalePar = "price", numMultiStarts = 10, startVals = wtp_mnl_pref$Estimate) pb$interrupt()30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48:
watcher$print_value(ev$value, ev$visible, envir) ev <- withVisible(eval(expr, envir)) }26: if (is_R_CMD_build() || is_R_CMD_check()) output <- find_vignette_product(name, by = "weave", engine = engine)withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), eval(expr, envir)35: 32: error <<- format(e) watcher$capture_plot_and_output() if (!have.makefile && vignette_is_tex(output)) {with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir)
watcher$print_value(ev$value, ev$visible, envir) } }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)27: error = function(e) { } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: TRUE}, handlers)
withOneRestart(expr, restarts[[1L]])
33: doWithOneRestart(return(expr), restart)
34: 35: eval(expr, envir)withRestartList(expr, restarts[-nr]) texi2pdf(file = output, clean = FALSE, quiet = quiet)
output <- find_vignette_product(name, by = "texi2pdf", engine = engine)28: }
withOneRestart(expr, restarts[[1L]])34: TRUE paste0("\n", rule(), error, "\n", rule()))}, error = function(e) { if (progress && is.function(pb$interrupt))
withOneRestart(expr, restarts[[1L]])}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
OK <<- FALSE
message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", 36: 58: 35: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) {40: withVisible(eval(expr, envir))withRestartList(expr, restarts[-nr])
pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })36: doWithOneRestart(return(expr), restart)
37: texi2pdf(file = output, clean = FALSE, quiet = quiet)doWithOneRestart(return(expr), restart)35:
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38:
file, conditionMessage(e)))withRestartList(expr, restarts[-nr])withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
output <- find_vignette_product(name, by = "texi2pdf", 29: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), })evaluate::evaluate(...)
withCallingHandlers(code, error = function (e) engine = engine)rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("mnl_models.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c2a3d208e.rds")
error = function(e) {49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) 37:
if (progress && is.function(pb$interrupt)) 40: pb$interrupt()evaluate::evaluate(...) error <<- format(e)withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])60: if (is_R_CMD_build() || is_R_CMD_check()) An irrecoverable exception occurred. R is aborting now ...
}
}), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) error <<- format(e)38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir))36:
tools:::.buildOneVignette("mnl_models.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", output <- find_vignette_product(name, by = "texi2pdf", TRUE, FALSE, "mnl_models", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c2a3d208e.rds") engine = engine)
if (on_message$silence) { }) invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) }
}An irrecoverable exception occurred. R is aborting now ...
doWithOneRestart(return(expr), restart) if (on_warning$silence) {41: 41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, watcher$capture_plot_and_output()}, error = function(e) { invokeRestart("muffleWarning")
evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, OK <<- FALSE
keep_message = if (is.numeric(options$message)) TRUE else options$message, 49: }with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) {37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", }, error = function (cnd) stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: withRestartList(expr, restarts) if (progress && is.function(pb$interrupt)) file, conditionMessage(e))) watcher$print_value(ev$value, ev$visible, envir)in_input_dir(evaluate(code, envir = env, new_device = FALSE, } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE,
keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, pb$interrupt(){ if (is_R_CMD_build() || is_R_CMD_check()) watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) {}) if (progress && is.function(pb$interrupt)) stop_on_error = if (is.numeric(options$error)) options$error else { pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, 39:
withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]]) keep_message = if (is.numeric(options$message)) TRUE else options$message, 51: stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) if (options$error && options$include) 60: keep_message = if (is.numeric(options$message)) TRUE else options$message, withRestarts(with_handlers({process_file(text, output)
0L38: withRestartList(expr, restarts)
error <<- format(e)tools:::.buildOneVignette("mnl_models.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr",
TRUE, FALSE, "mnl_models", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c2a3d208e.rds")
An irrecoverable exception occurred. R is aborting now ...
else 2L52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc) stop_on_error = if (is.numeric(options$error)) options$error else { }) if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
39:
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) for (expr in tle$exprs) { watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) }, output_handler = knit_handlers(options$render, options)) ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40:
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
50: 0Lxfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: 56: engine$weave(file, quiet = quiet, encoding = enc)
44: evaluate::evaluate(...)44: else 2Leng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt))
doTryCatch(return(expr), name, parentenv, handler)eng_r(options) error = function(e) {
41: if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check())
evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, pb$interrupt() error <<- format(e)57: keep_message = if (is.numeric(options$message)) TRUE else options$message, 56: 45: block_exec(params)doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])tryCatchOne(expr, names, parentenv, handlers[[1L]]) stop_on_error = if (is.numeric(options$error)) options$error else {
})
46: call_block(x)
47:
if (is_R_CMD_build() || is_R_CMD_check()) if (options$error && options$include) error <<- format(e)49: 58: process_group(group)tryCatchList(expr, classes, parentenv, handlers) 0L }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) {
with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),
if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) else 2L }), list(rlang_trace_top_env = knit_global())), function(loc) {58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc)48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) }, output_handler = knit_handlers(options$render, options))
setwd(wd)59: setwd(startdir) error = function(e) {42: if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: write_utf8(res, output %n% stdout())tryCatch({ pb$interrupt() output <- find_vignette_product(name, by = "weave", engine = engine)knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("mnl_models.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr",
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc) engine$weave(file, quiet = quiet, encoding = enc) TRUE, FALSE, "mnl_models", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c2a3d208e.rds")in_dir(input_dir(), expr) paste0("\nQuitting from ", loc, if (!is.null(error))
if (is_R_CMD_build() || is_R_CMD_check()) setwd(startdir) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule())) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
output <- find_vignette_product(name, by = "weave", engine = engine)56:
doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("mnl_models.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c2a3d208e.rds")An irrecoverable exception occurred. R is aborting now ...
58: 43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e)An irrecoverable exception occurred. R is aborting now ...
}), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("mnl_models.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c2a3d208e.rds")
An irrecoverable exception occurred. R is aborting now ...
}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: if (!have.makefile && vignette_is_tex(output)) { paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("mnl_models.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c2a3d208e.rds")
An irrecoverable exception occurred. R is aborting now ...
tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("mnl_models.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c2a3d208e.rds")
An irrecoverable exception occurred. R is aborting now ...
texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("mnl_models.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c2a3d208e.rds")
An irrecoverable exception occurred. R is aborting now ...
Quitting from mnl_models.Rmd:85-98 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `names(x) <- value`:
! 'names' attribute [3] must be the same length as the vector [0]
---
Backtrace:
▆
1. └─logitr::logitr(...)
2. └─logitr:::getMultistartSummary(allModels)
3. └─base::`colnames<-`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'mnl_models.Rmd' failed with diagnostics:
'names' attribute [3] must be the same length as the vector [0]
--- failed re-building ‘mnl_models.Rmd’
--- re-building ‘mnl_models_weighted.Rmd’ using rmarkdown
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = cars_us, outcome = "choice", obsID = "obsnum", pars = c("hev", "phev10", "phev20", "phev40", "bev75", "bev100", "bev150", "american", "japanese", "chinese", "skorean", "phevFastcharge", "bevFastcharge", "opCost", "accelTime"), scalePar = "price", robust = TRUE, numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("mnl_models_weighted.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models_weighted", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c51c7537.rds")
An irrecoverable exception occurred. R is aborting now ...
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = cars_us, outcome = "choice", obsID = "obsnum", pars = c("hev", "phev10", "phev20", "phev40", "bev75", "bev100", "bev150", "american", "japanese", "chinese", "skorean", "phevFastcharge", "bevFastcharge", "opCost", "accelTime"), scalePar = "price", robust = TRUE, numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
*** caught segfault ***
address 0x110, cause 'invalid permissions'
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) {
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar) if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e)
2: eval_f(x0, ...)
3: }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd)nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), 6: tryCatchList(expr, classes, parentenv, handlers)
output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) {
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message } output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE})
9: FUN(X[[i]], ...)
10: message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("mnl_models_weighted.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]]) TRUE, FALSE, "mnl_models_weighted", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c51c7537.rds")
An irrecoverable exception occurred. R is aborting now ...
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = cars_us, outcome = "choice", obsID = "obsnum", pars = c("hev", "phev10", "phev20", "phev40", "bev75", "bev100", "bev150", "american", "japanese", "chinese", "skorean", "phevFastcharge", "bevFastcharge", "opCost", "accelTime"), scalePar = "price", robust = TRUE, numMultiStarts = 10)
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)26: eval(expr, envir)
27: eval(expr, envir)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, 28: withVisible(eval(expr, envir))
29: mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() 6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: 34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output()
14: tryCatch(expr, error = function(e) { watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L else 2L }, output_handler = knit_handlers(options$render, options))
42: sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b")in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x) if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
47: process_group(group)
48: 18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), 23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs) error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e)
25: logitr(data = cars_us, outcome = "choice", obsID = "obsnum", pars = c("hev", "phev10", "phev20", "phev40", "bev75", "bev100", "bev150", "american", "japanese", "chinese", "skorean", "phevFastcharge", "bevFastcharge", "opCost", "accelTime"), scalePar = "price", robust = TRUE, numMultiStarts = 10)
26: eval(expr, envir)
}), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) {}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output) watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
{ if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd)57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
60: tools:::.buildOneVignette("mnl_models_weighted.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models_weighted", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c51c7537.rds")
An irrecoverable exception occurred. R is aborting now ...
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("mnl_models_weighted.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models_weighted", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c51c7537.rds")
An irrecoverable exception occurred. R is aborting now ...
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L)
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler) } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings())
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ } invisible(structure(msg, class = "try-error", condition = e))})
result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
}) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message25: logitr(data = cars_us, outcome = "choice", obsID = "obsnum", pars = c("hev", "phev10", "phev20", "phev40", "bev75", "bev100", "bev150", "american", "japanese", "chinese", "skorean", "phevFastcharge", "bevFastcharge", "opCost", "accelTime"), scalePar = "price", robust = TRUE, numMultiStarts = 10)
26: eval(expr, envir)
27: }})eval(expr, envir)
28: withVisible(eval(expr, envir))
29:
9: FUN(X[[i]], ...)withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output()
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE) invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)17: FUN(X[[i]], ...)
18:
34: withOneRestart(expr, restarts[[1L]])
lapply(seq_len(cores), inner.do)
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) {19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21:
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) {
24: runMultistart(modelInputs)
25: logitr(data = cars_us, outcome = "choice", obsID = "obsnum", if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pars = c("hev", "phev10", "phev20", "phev40", "bev75", "bev100", "bev150", "american", "japanese", "chinese", "skorean", "phevFastcharge", "bevFastcharge", "opCost", "accelTime"), scalePar = "price", robust = TRUE, numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: }, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd)engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
{ watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), 59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call) OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60:
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) {tools:::.buildOneVignette("mnl_models_weighted.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models_weighted", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c51c7537.rds")
An irrecoverable exception occurred. R is aborting now ...
ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("mnl_models_weighted.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models_weighted", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c51c7537.rds")
An irrecoverable exception occurred. R is aborting now ...
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = cars_us, outcome = "choice", obsID = "obsnum", pars = c("hev", "phev10", "phev20", "phev40", "bev75", "bev100", "bev150", "american", "japanese", "chinese", "skorean", "phevFastcharge", "bevFastcharge", "opCost", "accelTime"), scalePar = "price", robust = TRUE, numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31:
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]]34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") }evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check())
*** caught segfault ***
18: lapply(seq_len(cores), inner.do)
19: error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))parallel::mclapply(miList, runModel, mc.cores = numCores)address 0x110, cause 'invalid permissions'
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = cars_us, outcome = "choice", obsID = "obsnum", pars = c("hev", "phev10", "phev20", "phev40", "bev75", "bev100", "bev150", "american", "japanese", "chinese", "skorean", "phevFastcharge", "bevFastcharge", "opCost", "accelTime"), scalePar = "price", robust = TRUE, numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) {}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output) watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() }
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
60: tools:::.buildOneVignette("mnl_models_weighted.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models_weighted", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c51c7537.rds")
An irrecoverable exception occurred. R is aborting now ...
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("mnl_models_weighted.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models_weighted", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c51c7537.rds")
An irrecoverable exception occurred. R is aborting now ...
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
*** caught segfault ***
address 0x110, cause 'invalid permissions'
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = cars_us, outcome = "choice", obsID = "obsnum", pars = c("hev", "phev10", "phev20", "phev40", "bev75", "bev100", "bev150", "american", "japanese", "chinese", "skorean", "phevFastcharge", "bevFastcharge", "opCost", "accelTime"), scalePar = "price", robust = TRUE, numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("mnl_models_weighted.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models_weighted", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c51c7537.rds")
An irrecoverable exception occurred. R is aborting now ...
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = cars_us, outcome = "choice", obsID = "obsnum", pars = c("hev", "phev10", "phev20", "phev40", "bev75", "bev100", "bev150", "american", "japanese", "chinese", "skorean", "phevFastcharge", "bevFastcharge", "opCost", "accelTime"), scalePar = "price", robust = TRUE, numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("mnl_models_weighted.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models_weighted", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c51c7537.rds")
An irrecoverable exception occurred. R is aborting now ...
Quitting from mnl_models_weighted.Rmd:64-80 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `names(x) <- value`:
! 'names' attribute [3] must be the same length as the vector [0]
---
Backtrace:
▆
1. └─logitr::logitr(...)
2. └─logitr:::getMultistartSummary(allModels)
3. └─base::`colnames<-`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'mnl_models_weighted.Rmd' failed with diagnostics:
'names' attribute [3] must be the same length as the vector [0]
--- failed re-building ‘mnl_models_weighted.Rmd’
--- re-building ‘mxl_models.Rmd’ using rmarkdown
--- finished re-building ‘mxl_models.Rmd’
--- re-building ‘predict.Rmd’ using rmarkdown
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("predict.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "predict", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c7e74e8ad.rds")
An irrecoverable exception occurred. R is aborting now ...
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("predict.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "predict", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c7e74e8ad.rds")
An irrecoverable exception occurred. R is aborting now ...
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("predict.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "predict", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c7e74e8ad.rds")
An irrecoverable exception occurred. R is aborting now ...
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("predict.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "predict", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c7e74e8ad.rds")
An irrecoverable exception occurred. R is aborting now ...
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("predict.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "predict", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c7e74e8ad.rds")
An irrecoverable exception occurred. R is aborting now ...
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
27:
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd)system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) watcher$push(cnd) }), list(rlang_trace_top_env = knit_global()))
switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)50: })
30: eval(call)
31: eval(call)
*** caught segfault ***
address 0x110, cause 'invalid permissions'
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("predict.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "predict", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c7e74e8ad.rds")
An irrecoverable exception occurred. R is aborting now ...
xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("predict.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "predict", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c7e74e8ad.rds")
An irrecoverable exception occurred. R is aborting now ...
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
*** caught segfault ***
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), address 0x110, cause 'invalid permissions'
error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("predict.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "predict", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c7e74e8ad.rds")
An irrecoverable exception occurred. R is aborting now ...
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
*** caught segfault ***
address 0x110, cause 'invalid permissions'
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("predict.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "predict", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c7e74e8ad.rds")
An irrecoverable exception occurred. R is aborting now ...
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("predict.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "predict", "UTF-8", "/Volumes/Temp/tmp/RtmpYloqIO/file517c7e74e8ad.rds")
An irrecoverable exception occurred. R is aborting now ...
Quitting from predict.Rmd:91-109 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `names(x) <- value`:
! 'names' attribute [3] must be the same length as the vector [0]
---
Backtrace:
▆
1. └─logitr::logitr(...)
2. └─logitr:::getMultistartSummary(allModels)
3. └─base::`colnames<-`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'predict.Rmd' failed with diagnostics:
'names' attribute [3] must be the same length as the vector [0]
--- failed re-building ‘predict.Rmd’
--- re-building ‘summarizing_results.Rmd’ using rmarkdown
--- finished re-building ‘summarizing_results.Rmd’
--- re-building ‘utility_models.Rmd’ using rmarkdown
--- finished re-building ‘utility_models.Rmd’
SUMMARY: processing the following files failed:
‘basic_usage.Rmd’ ‘mnl_models.Rmd’ ‘mnl_models_weighted.Rmd’
‘predict.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-arm64