Last updated on 2026-03-01 03:50:31 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.10.0 | 37.32 | 825.25 | 862.57 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.10.0 | 23.23 | 533.77 | 557.00 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.10.0 | 65.00 | 1204.62 | 1269.62 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.10.0 | 67.00 | 1336.42 | 1403.42 | ERROR | |
| r-devel-macos-arm64 | 0.10.0 | 8.00 | 122.00 | 130.00 | OK | |
| r-devel-windows-x86_64 | 0.10.0 | 37.00 | 593.00 | 630.00 | OK | |
| r-patched-linux-x86_64 | 0.10.0 | 52.10 | 746.38 | 798.48 | OK | |
| r-release-linux-x86_64 | 0.10.0 | 36.68 | 734.52 | 771.20 | OK | |
| r-release-macos-arm64 | 0.10.0 | OK | ||||
| r-release-macos-x86_64 | 0.10.0 | 26.00 | 542.00 | 568.00 | OK | |
| r-release-windows-x86_64 | 0.10.0 | 38.00 | 554.00 | 592.00 | OK | |
| r-oldrel-macos-arm64 | 0.10.0 | 8.00 | 119.00 | 127.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.10.0 | 27.00 | 1012.00 | 1039.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.10.0 | 56.00 | 676.00 | 732.00 | ERROR |
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [13m/17m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_Graph.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
Saving _problems/test_filter_ensemble-294.R
Saving _problems/test_filter_ensemble-307.R
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1]
> test_pipeop_blsmote.R: "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1]
> test_pipeop_blsmote.R: "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1]
> test_pipeop_blsmote.R: "Borderline-SMOTE done"
> test_pipeop_isomap.R: 2026-02-28 09:51:33.298126: Isomap START
> test_pipeop_isomap.R: 2026-02-28 09:51:33.299398: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 09:51:33.356761: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 09:51:33.446195: Classical Scaling
> test_pipeop_isomap.R: 2026-02-28 09:51:33.677205: Isomap START
> test_pipeop_isomap.R: 2026-02-28 09:51:33.678203: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 09:51:33.713646: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 09:51:33.77519: Classical Scaling
> test_pipeop_isomap.R: 2026-02-28 09:51:33.888383: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-28 09:51:33.889548: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 09:51:33.963673: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 09:51:34.217124: embedding
> test_pipeop_isomap.R: 2026-02-28 09:51:34.22714: DONE
> test_pipeop_isomap.R: 2026-02-28 09:51:34.344432: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-28 09:51:34.349363: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 09:51:34.402136: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 09:51:34.541137: embedding
> test_pipeop_isomap.R: 2026-02-28 09:51:34.547383: DONE
> test_pipeop_isomap.R: 2026-02-28 09:51:35.029253: Isomap START
> test_pipeop_isomap.R: 2026-02-28 09:51:35.0339: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 09:51:35.173469: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 09:51:35.512059: Classical Scaling
> test_pipeop_isomap.R: 2026-02-28 09:51:35.729881: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-28 09:51:35.73101: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 09:51:35.854639: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 09:51:36.562719: embedding
> test_pipeop_isomap.R: 2026-02-28 09:51:36.571353: DONE
> test_pipeop_isomap.R: 2026-02-28 09:51:36.862752: Isomap START
> test_pipeop_isomap.R: 2026-02-28 09:51:36.863407: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 09:51:36.879042: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 09:51:36.908379: Classical Scaling
> test_pipeop_isomap.R: 2026-02-28 09:51:36.963058: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-28 09:51:36.965769: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 09:51:36.988853: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 09:51:37.050907: embedding
> test_pipeop_isomap.R: 2026-02-28 09:51:37.054411: DONE
> test_pipeop_isomap.R: 2026-02-28 09:51:37.358407: Isomap START
> test_pipeop_isomap.R: 2026-02-28 09:51:37.360029: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 09:51:37.381763: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 09:51:37.440038: Classical Scaling
> test_pipeop_isomap.R: 2026-02-28 09:51:37.592648: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-28 09:51:37.595659: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 09:51:37.635804: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 09:51:37.700735: embedding
> test_pipeop_isomap.R: 2026-02-28 09:51:37.702608: DONE
> test_pipeop_isomap.R: 2026-02-28 09:51:37.835576: Isomap START
> test_pipeop_isomap.R: 2026-02-28 09:51:37.83871: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 09:51:37.851756: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 09:51:37.881555: Classical Scaling
> test_pipeop_isomap.R: 2026-02-28 09:51:37.962319: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-28 09:51:37.963335: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 09:51:37.988116: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 09:51:38.056096: embedding
> test_pipeop_isomap.R: 2026-02-28 09:51:38.057963: DONE
> test_pipeop_isomap.R: 2026-02-28 09:51:38.196623: Isomap START
> test_pipeop_isomap.R: 2026-02-28 09:51:38.197221: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 09:51:38.225657: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 09:51:38.255715: Classical Scaling
> test_pipeop_isomap.R: 2026-02-28 09:51:38.340125: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-28 09:51:38.342835: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 09:51:38.368426: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 09:51:38.440994: embedding
> test_pipeop_isomap.R: 2026-02-28 09:51:38.445893: DONE
> test_pipeop_isomap.R: 2026-02-28 09:51:38.57707: Isomap START
> test_pipeop_isomap.R: 2026-02-28 09:51:38.577729: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 09:51:38.595469: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 09:51:38.624974: Classical Scaling
> test_pipeop_isomap.R: 2026-02-28 09:51:38.706346: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-28 09:51:38.707345: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 09:51:38.758416: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 09:51:38.901907: embedding
> test_pipeop_isomap.R: 2026-02-28 09:51:38.908334: DONE
> test_pipeop_isomap.R: 2026-02-28 09:51:39.227509: Isomap START
> test_pipeop_isomap.R: 2026-02-28 09:51:39.228217: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 09:51:39.25412: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 09:51:39.341903: Classical Scaling
> test_pipeop_isomap.R: 2026-02-28 09:51:39.764216: Isomap START
> test_pipeop_isomap.R: 2026-02-28 09:51:39.766929: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 09:51:39.79746: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 09:51:39.858643: Classical Scaling
> test_pipeop_isomap.R: 2026-02-28 09:51:39.957517: Isomap START
> test_pipeop_isomap.R: 2026-02-28 09:51:39.963902: constructing knn graph
> test_pipeop_isomap.R: 2026-02-28 09:51:39.986954: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-28 09:51:40.050243: Classical Scaling
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
══ Skipped tests (100) ═════════════════════════════════════════════════════════
• On CRAN (96): 'test_CnfFormula.R:591:3', 'test_CnfFormula_simplify.R:6:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_colapply.R:9:3', 'test_pipeop_collapsefactors.R:6:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_datefeatures.R:10:3', 'test_pipeop_encodeimpact.R:11:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_isomap.R:10:3', 'test_pipeop_kernelpca.R:9:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_info.R:6:3',
'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_missind.R:6:3',
'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_multiplicityexply.R:9:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_mutate.R:9:3',
'test_pipeop_nearmiss.R:7:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafoscalerange.R:5:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('Mean relative difference: 0.3845363')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
2. └─testthat::expect_true(...)
[ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [109s/54s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-03-01 10:47:01.447651: Isomap START
> test_pipeop_isomap.R: 2026-03-01 10:47:01.447899: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 10:47:01.450847: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 10:47:01.456946: Classical Scaling
> test_pipeop_isomap.R: 2026-03-01 10:47:01.469089: Isomap START
> test_pipeop_isomap.R: 2026-03-01 10:47:01.46924: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 10:47:01.471793: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 10:47:01.477795: Classical Scaling
> test_pipeop_isomap.R: 2026-03-01 10:47:01.496522: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-01 10:47:01.496719: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 10:47:01.501003: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 10:47:01.515609: embedding
> test_pipeop_isomap.R: 2026-03-01 10:47:01.515968: DONE
> test_pipeop_isomap.R: 2026-03-01 10:47:01.522262: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-01 10:47:01.522419: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 10:47:01.527131: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 10:47:01.541872: embedding
> test_pipeop_isomap.R: 2026-03-01 10:47:01.542338: DONE
> test_pipeop_isomap.R: 2026-03-01 10:47:01.562365: Isomap START
> test_pipeop_isomap.R: 2026-03-01 10:47:01.562499: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 10:47:01.566875: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 10:47:01.59955: Classical Scaling
> test_pipeop_isomap.R: 2026-03-01 10:47:01.608335: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-01 10:47:01.608523: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 10:47:01.616903: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 10:47:01.693844: embedding
> test_pipeop_isomap.R: 2026-03-01 10:47:01.695117: DONE
> test_pipeop_isomap.R: 2026-03-01 10:47:01.729295: Isomap START
> test_pipeop_isomap.R: 2026-03-01 10:47:01.729463: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 10:47:01.731809: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 10:47:01.737857: Classical Scaling
> test_pipeop_isomap.R: 2026-03-01 10:47:01.745321: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-01 10:47:01.745517: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 10:47:01.749988: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 10:47:01.764921: embedding
> test_pipeop_isomap.R: 2026-03-01 10:47:01.765429: DONE
> test_pipeop_isomap.R: 2026-03-01 10:47:01.806002: Isomap START
> test_pipeop_isomap.R: 2026-03-01 10:47:01.806208: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 10:47:01.808602: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 10:47:01.814847: Classical Scaling
> test_pipeop_isomap.R: 2026-03-01 10:47:01.827017: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-01 10:47:01.827205: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 10:47:01.831668: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 10:47:01.846197: embedding
> test_pipeop_isomap.R: 2026-03-01 10:47:01.84664: DONE
> test_pipeop_isomap.R: 2026-03-01 10:47:01.865007: Isomap START
> test_pipeop_isomap.R: 2026-03-01 10:47:01.865133: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 10:47:01.867336: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 10:47:01.873295: Classical Scaling
> test_pipeop_isomap.R: 2026-03-01 10:47:01.885488: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-01 10:47:01.885679: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 10:47:01.890178: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 10:47:01.904923: embedding
> test_pipeop_isomap.R: 2026-03-01 10:47:01.905296: DONE
> test_pipeop_isomap.R: 2026-03-01 10:47:01.922728: Isomap START
> test_pipeop_isomap.R: 2026-03-01 10:47:01.922852: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 10:47:01.925172: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 10:47:01.931247: Classical Scaling
> test_pipeop_isomap.R: 2026-03-01 10:47:01.942659: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-01 10:47:01.942829: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 10:47:01.94726: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 10:47:01.961755: embedding
> test_pipeop_isomap.R: 2026-03-01 10:47:01.962166: DONE
> test_pipeop_isomap.R: 2026-03-01 10:47:01.982558: Isomap START
> test_pipeop_isomap.R: 2026-03-01 10:47:01.982696: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 10:47:01.985077: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 10:47:01.991087: Classical Scaling
> test_pipeop_isomap.R: 2026-03-01 10:47:02.002679: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-01 10:47:02.002901: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 10:47:02.007699: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 10:47:02.022669: embedding
> test_pipeop_isomap.R: 2026-03-01 10:47:02.023074: DONE
> test_pipeop_isomap.R: 2026-03-01 10:47:02.050687: Isomap START
> test_pipeop_isomap.R: 2026-03-01 10:47:02.050826: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 10:47:02.052972: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 10:47:02.058961: Classical Scaling
> test_pipeop_isomap.R: 2026-03-01 10:47:02.077245: Isomap START
> test_pipeop_isomap.R: 2026-03-01 10:47:02.077382: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 10:47:02.079576: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 10:47:02.084877: Classical Scaling
> test_pipeop_isomap.R: 2026-03-01 10:47:02.089535: Isomap START
> test_pipeop_isomap.R: 2026-03-01 10:47:02.089642: constructing knn graph
> test_pipeop_isomap.R: 2026-03-01 10:47:02.091638: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-01 10:47:02.096924: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_chunk.R:4:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_colapply.R:9:3', 'test_pipeop_collapsefactors.R:6:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [408s/491s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-02-27 01:29:03.399151: Isomap START
> test_pipeop_isomap.R: 2026-02-27 01:29:03.399967: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:03.416103: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:03.434603: Classical Scaling
> test_pipeop_isomap.R: 2026-02-27 01:29:03.50995: Isomap START
> test_pipeop_isomap.R: 2026-02-27 01:29:03.510327: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:03.51764: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:03.574016: Classical Scaling
> test_pipeop_isomap.R: 2026-02-27 01:29:03.73668: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-27 01:29:03.73716: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:03.791667: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:03.89158: embedding
> test_pipeop_isomap.R: 2026-02-27 01:29:03.896006: DONE
> test_pipeop_isomap.R: 2026-02-27 01:29:03.930617: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-27 01:29:03.930925: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:04.023799: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:04.075842: embedding
> test_pipeop_isomap.R: 2026-02-27 01:29:04.07712: DONE
> test_pipeop_isomap.R: 2026-02-27 01:29:04.203259: Isomap START
> test_pipeop_isomap.R: 2026-02-27 01:29:04.203566: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:04.242487: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:04.388786: Classical Scaling
> test_pipeop_isomap.R: 2026-02-27 01:29:04.42908: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-27 01:29:04.429915: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:04.479302: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:04.768006: embedding
> test_pipeop_isomap.R: 2026-02-27 01:29:04.7743: DONE
> test_pipeop_isomap.R: 2026-02-27 01:29:04.960508: Isomap START
> test_pipeop_isomap.R: 2026-02-27 01:29:04.962507: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:04.973301: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:04.998662: Classical Scaling
> test_pipeop_isomap.R: 2026-02-27 01:29:05.059137: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-27 01:29:05.060964: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:05.106994: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:05.161383: embedding
> test_pipeop_isomap.R: 2026-02-27 01:29:05.162826: DONE
> test_pipeop_isomap.R: 2026-02-27 01:29:05.449233: Isomap START
> test_pipeop_isomap.R: 2026-02-27 01:29:05.449539: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:05.461642: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:05.484978: Classical Scaling
> test_pipeop_isomap.R: 2026-02-27 01:29:05.539906: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-27 01:29:05.540343: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:05.700235: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:05.801171: embedding
> test_pipeop_isomap.R: 2026-02-27 01:29:05.810546: DONE
> test_pipeop_isomap.R: 2026-02-27 01:29:05.950505: Isomap START
> test_pipeop_isomap.R: 2026-02-27 01:29:05.95081: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:05.95859: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:05.981624: Classical Scaling
> test_pipeop_isomap.R: 2026-02-27 01:29:06.056112: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-27 01:29:06.056597: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:06.121029: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:06.21348: embedding
> test_pipeop_isomap.R: 2026-02-27 01:29:06.214874: DONE
> test_pipeop_isomap.R: 2026-02-27 01:29:06.356239: Isomap START
> test_pipeop_isomap.R: 2026-02-27 01:29:06.356571: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:06.364343: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:06.451169: Classical Scaling
> test_pipeop_isomap.R: 2026-02-27 01:29:06.575458: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-27 01:29:06.575922: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:06.615386: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:06.711864: embedding
> test_pipeop_isomap.R: 2026-02-27 01:29:06.714633: DONE
> test_pipeop_isomap.R: 2026-02-27 01:29:06.936186: Isomap START
> test_pipeop_isomap.R: 2026-02-27 01:29:06.936555: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:06.954898: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:06.981995: Classical Scaling
> test_pipeop_isomap.R: 2026-02-27 01:29:07.047532: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-27 01:29:07.047965: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:07.074434: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:07.141736: embedding
> test_pipeop_isomap.R: 2026-02-27 01:29:07.143025: DONE
> test_pipeop_isomap.R: 2026-02-27 01:29:07.234886: Isomap START
> test_pipeop_isomap.R: 2026-02-27 01:29:07.23518: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:07.243438: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:07.265758: Classical Scaling
> test_pipeop_isomap.R: 2026-02-27 01:29:07.347316: Isomap START
> test_pipeop_isomap.R: 2026-02-27 01:29:07.347631: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:07.368454: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:07.394061: Classical Scaling
> test_pipeop_isomap.R: 2026-02-27 01:29:07.421289: Isomap START
> test_pipeop_isomap.R: 2026-02-27 01:29:07.421576: constructing knn graph
> test_pipeop_isomap.R: 2026-02-27 01:29:07.429301: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-27 01:29:07.459085: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_quantilebin.R:5:3', 'test_pipeop_randomprojection.R:6:3',
'test_pipeop_randomresponse.R:5:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [294s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-02-25 16:53:35.175809: Isomap START
> test_pipeop_isomap.R: 2026-02-25 16:53:35.176823: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:35.190077: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:35.212139: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 16:53:35.291769: Isomap START
> test_pipeop_isomap.R: 2026-02-25 16:53:35.292485: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:35.305269: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:35.327881: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 16:53:35.375384: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-25 16:53:35.376312: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:35.41152: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:35.455348: embedding
> test_pipeop_isomap.R: 2026-02-25 16:53:35.457078: DONE
> test_pipeop_isomap.R: 2026-02-25 16:53:35.504244: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-25 16:53:35.505022: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:35.525146: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:35.575999: embedding
> test_pipeop_isomap.R: 2026-02-25 16:53:35.577889: DONE
> test_pipeop_isomap.R: 2026-02-25 16:53:35.712001: Isomap START
> test_pipeop_isomap.R: 2026-02-25 16:53:35.712591: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:35.736012: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:35.841057: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 16:53:35.879798: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-25 16:53:35.880448: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:36.004977: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:36.243402: embedding
> test_pipeop_isomap.R: 2026-02-25 16:53:36.250602: DONE
> test_pipeop_isomap.R: 2026-02-25 16:53:36.487825: Isomap START
> test_pipeop_isomap.R: 2026-02-25 16:53:36.488453: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:36.498584: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:36.521234: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 16:53:36.569843: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-25 16:53:36.570687: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:36.593: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:36.64245: embedding
> test_pipeop_isomap.R: 2026-02-25 16:53:36.64431: DONE
> test_pipeop_isomap.R: 2026-02-25 16:53:36.858807: Isomap START
> test_pipeop_isomap.R: 2026-02-25 16:53:36.859413: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:36.870062: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:36.893007: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 16:53:36.96995: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-25 16:53:36.970851: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:36.995393: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:37.047838: embedding
> test_pipeop_isomap.R: 2026-02-25 16:53:37.050014: DONE
> test_pipeop_isomap.R: 2026-02-25 16:53:37.191469: Isomap START
> test_pipeop_isomap.R: 2026-02-25 16:53:37.192106: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:37.203523: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:37.224898: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 16:53:37.301394: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-25 16:53:37.302275: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:37.323626: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:37.360074: embedding
> test_pipeop_isomap.R: 2026-02-25 16:53:37.361463: DONE
> test_pipeop_isomap.R: 2026-02-25 16:53:37.492268: Isomap START
> test_pipeop_isomap.R: 2026-02-25 16:53:37.492909: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:37.502373: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:37.522678: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 16:53:37.594993: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-25 16:53:37.595875: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:37.617954: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:37.667016: embedding
> test_pipeop_isomap.R: 2026-02-25 16:53:37.668821: DONE
> test_pipeop_isomap.R: 2026-02-25 16:53:37.775062: Isomap START
> test_pipeop_isomap.R: 2026-02-25 16:53:37.775654: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:37.788062: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:37.810837: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 16:53:37.893541: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-25 16:53:37.894448: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:37.916797: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:37.954928: embedding
> test_pipeop_isomap.R: 2026-02-25 16:53:37.955997: DONE
> test_pipeop_isomap.R: 2026-02-25 16:53:38.059554: Isomap START
> test_pipeop_isomap.R: 2026-02-25 16:53:38.059993: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:38.067583: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:38.08821: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 16:53:38.197578: Isomap START
> test_pipeop_isomap.R: 2026-02-25 16:53:38.198193: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:38.209329: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:38.225198: Classical Scaling
> test_pipeop_isomap.R: 2026-02-25 16:53:38.250183: Isomap START
> test_pipeop_isomap.R: 2026-02-25 16:53:38.250623: constructing knn graph
> test_pipeop_isomap.R: 2026-02-25 16:53:38.257674: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-25 16:53:38.277822: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64