Last updated on 2025-12-12 03:51:57 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.0.1 | 2.02 | 43.54 | 45.56 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.0.1 | 1.57 | 26.08 | 27.65 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.0.1 | 68.43 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.0.1 | 77.55 | OK | |||
| r-devel-windows-x86_64 | 0.0.1 | 3.00 | 61.00 | 64.00 | OK | |
| r-patched-linux-x86_64 | 0.0.1 | 2.35 | 39.85 | 42.20 | OK | |
| r-release-linux-x86_64 | 0.0.1 | 1.91 | 40.01 | 41.92 | OK | |
| r-release-macos-arm64 | 0.0.1 | OK | ||||
| r-release-macos-x86_64 | 0.0.1 | 2.00 | 53.00 | 55.00 | OK | |
| r-release-windows-x86_64 | 0.0.1 | 3.00 | 63.00 | 66.00 | OK | |
| r-oldrel-macos-arm64 | 0.0.1 | OK | ||||
| r-oldrel-macos-x86_64 | 0.0.1 | 2.00 | 61.00 | 63.00 | OK | |
| r-oldrel-windows-x86_64 | 0.0.1 | 5.00 | 69.00 | 74.00 | OK |
Version: 0.0.1
Check: examples
Result: ERROR
Running examples in ‘o2ools-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: get_accuracy
> ### Title: Calculate the accuracy of outbreak reconstruction
> ### Aliases: get_accuracy
>
> ### ** Examples
>
> true_tree <- data.frame(from = as.character(outbreaker2::fake_outbreak$ances), to = linelist$id)
Error in loadNamespace(x) : there is no package called ‘outbreaker2’
Calls: data.frame ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘o2ools.Rmd’ using rmarkdown
Quitting from o2ools.Rmd:22-25 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'outbreaker2'
---
Backtrace:
▆
1. └─base::library(outbreaker2)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'o2ools.Rmd' failed with diagnostics:
there is no package called 'outbreaker2'
--- failed re-building ‘o2ools.Rmd’
SUMMARY: processing the following file failed:
‘o2ools.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc